If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ), 'gf_id' => 'HOM05D000934', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000934' ), 'data_identifier' => 'HOM05D000934', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000934', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p64910' => 'bna', 'A03p64950' => 'bna', 'A05p30290' => 'bna', 'A06p03750' => 'bna', 'A06p09760' => 'bna', 'A07p16830' => 'bna', 'A08p03740' => 'bna', 'Aa31LG10G4310' => 'aar', 'Aa31LG1G1240' => 'aar', 'Aa31LG1G15640' => 'aar', 'Aa31LG6G14030' => 'aar', 'Aa31LG8G6090' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4778' => 'aag', 'Actinidia00430' => 'ach', 'Actinidia12039' => 'ach', 'Actinidia12046' => 'ach', 'Actinidia13395' => 'ach', 'Actinidia18072' => 'ach', 'Actinidia30623' => 'ach', 'Actinidia36481' => 'ach', 'Actinidia36484' => 'ach', 'Ah.01g017830' => 'amhyb', 'Ah.02g124350' => 'amhyb', 'Ah.03g138760' => 'amhyb', 'Ah.03g145320' => 'amhyb', 'Ah.03g145460' => 'amhyb', 'Ah.10g038120' => 'amhyb', 'AL1G25460' => 'aly', 'AL1G57180' => 'aly', 'AL3G32710' => 'aly', 'AL7G13710' => 'aly', 'AL8G44230' => 'aly', 'Aqoxy5G01030' => 'aox', 'Aqoxy5G01190' => 'aox', 'Aqoxy5G01204' => 'aox', 'Aqoxy6G01291' => 'aox', 'Aqoxy6G01292' => 'aox', 'Aqoxy6G01763' => 'aox', 'Aqoxy6G01764' => 'aox', 'arahy.Tifrunner.gnm1.ann1.55ECQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JW9VH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C25U6B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FC000Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FZWY62' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE1UVX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IG8JQ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5FIKQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PA1VEW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PH8LKT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNIY5E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QPVZ86' => 'arhy', 'AT1G13680' => 'ath', 'AT1G49740' => 'ath', 'AT3G19310' => 'ath', 'AT4G36945' => 'ath', 'AT5G67130' => 'ath', 'ATR0584G166' => 'atr', 'ATR0800G146' => 'atr', 'ATR0827G122' => 'atr', 'Atru.chr11.1600' => 'acertr', 'Atru.chr3.286' => 'acertr', 'Atru.chr3.287' => 'acertr', 'Atru.chr3.299' => 'acertr', 'Atru.chr3.308' => 'acertr', 'Atru.chr5.2666' => 'acertr', 'Atru.chr5.2667' => 'acertr', 'Atru.chr8.536' => 'acertr', 'AUR62001909' => 'cqu', 'AUR62001917' => 'cqu', 'AUR62003078' => 'cqu', 'AUR62003891' => 'cqu', 'AUR62003899' => 'cqu', 'AUR62007895' => 'cqu', 'AUR62009491' => 'cqu', 'AUR62010236' => 'cqu', 'AUR62010238' => 'cqu', 'AUR62013221' => 'cqu', 'AUR62023169' => 'cqu', 'BcaB02g06465' => 'bca', 'BcaB02g09932' => 'bca', 'BcaB04g17308' => 'bca', 'BcaB06g25984' => 'bca', 'BcaB07g33655' => 'bca', 'BcaC05g25274' => 'bca', 'BcaC05g28500' => 'bca', 'BcaC07g37021' => 'bca', 'BcaC08g43153' => 'bca', 'BcaNung05427' => 'bca', 'BolC1t04450H' => 'bol', 'BolC5t29900H' => 'bol', 'BolC5t33301H' => 'bol', 'BolC6t35565H' => 'bol', 'BolC7t42981H' => 'bol', 'BolC7t46638H' => 'bol', 'BolC7t46640H' => 'bol', 'BolC8t47185H' => 'bol', 'BraA01t03612Z' => 'bra', 'BraA03t15552Z' => 'bra', 'BraA05t21867Z' => 'bra', 'BraA06t23580Z' => 'bra', 'BraA06t24165Z' => 'bra', 'BraA07t29408Z' => 'bra', 'BraA08t32402Z' => 'bra', 'C01p44830' => 'bna', 'C05p11510' => 'bna', 'C05p45810' => 'bna', 'C06p04360' => 'bna', 'C07p24610' => 'bna', 'C07p62220' => 'bna', 'C07p62240' => 'bna', 'C08p03880' => 'bna', 'CAN.G1041.42' => 'can', 'CAN.G151.7' => 'can', 'CAN.G2059.2' => 'can', 'CAN.G370.39' => 'can', 'CAN.G370.50' => 'can', 'CAN.G497.80' => 'can', 'CANSAT01G2392' => 'cansat', 'CANSAT01G3082' => 'cansat', 'CANSAT25G1211' => 'cansat', 'CANSAT64G2223' => 'cansat', 'CARHR039780' => 'chi', 'CARHR094710' => 'chi', 'CARHR245560' => 'chi', 'CARHR280520' => 'chi', 'Carub.0001s1341' => 'cru', 'Carub.0001s3895' => 'cru', 'Carub.0003s1914' => 'cru', 'Carub.0007s0313' => 'cru', 'Carub.0008s2738' => 'cru', 'Ca_05003_v3' => 'car', 'Ca_06826_v3' => 'car', 'Ca_06829_v3' => 'car', 'Ca_18702_v3' => 'car', 'Ca_18703_v3' => 'car', 'Ca_22153_v3' => 'car', 'Ca_24755_v3' => 'car', 'Ca_24761_v3' => 'car', 'CBR_g16980' => 'cbr', 'Cc00_g02630' => 'ccan', 'Cc00_g14170' => 'ccan', 'Cc02_g18920' => 'ccan', 'Cc02_g33700' => 'ccan', 'Cc07_g06100' => 'ccan', 'Cc07_g06150' => 'ccan', 'Cc08_g04820' => 'ccan', 'CDE01G0594' => 'cde', 'CDE02G0288' => 'cde', 'CDE04G2834' => 'cde', 'CDE08G0166' => 'cde', 'CDE08G0420' => 'cde', 'Cfa004037' => 'cfa', 'Cfa007684' => 'cfa', 'Cfa022760' => 'cfa', 'Ciclev10003333m.g' => 'ccl', 'Ciclev10012018m.g' => 'ccl', 'Ciclev10013394m.g' => 'ccl', 'Ciclev10025639m.g' => 'ccl', 'Ciclev10025701m.g' => 'ccl', 'Ciclev10028578m.g' => 'ccl', 'Ciclev10033330m.g' => 'ccl', 'Ciclev10033860m.g' => 'ccl', 'CiPaw.01G016100' => 'cil', 'CiPaw.01G016900' => 'cil', 'CiPaw.03G084200' => 'cil', 'CiPaw.04G052700' => 'cil', 'CiPaw.05G007800' => 'cil', 'ClCG02G012300' => 'cla', 'ClCG05G010070' => 'cla', 'ClCG11G004910' => 'cla', 'COL.COLO4_04493' => 'col', 'COL.COLO4_11439' => 'col', 'COL.COLO4_11447' => 'col', 'COL.COLO4_27853' => 'col', 'COL.COLO4_32638' => 'col', 'COL.COLO4_33630' => 'col', 'Cpa.g.sc1.154' => 'cpa', 'Cpa.g.sc14.208' => 'cpa', 'Cpa.g.sc1524.2' => 'cpa', 'Cpa.g.sc1524.3' => 'cpa', 'Cpa.g.sc55.124' => 'cpa', 'Cpa.g.sc55.136' => 'cpa', 'CsaV3_2G016450' => 'csa', 'CsaV3_3G018470' => 'csa', 'CsaV3_5G038640' => 'csa', 'CsaV3_6G043350' => 'csa', 'CSS0000375' => 'camsi', 'CSS0006422' => 'camsi', 'CSS0006898' => 'camsi', 'CSS0015743' => 'camsi', 'CSS0020967' => 'camsi', 'CSS0021639' => 'camsi', 'CSS0022800' => 'camsi', 'CSS0025691' => 'camsi', 'CSS0026591' => 'camsi', 'CSS0027951' => 'camsi', 'CSS0028742' => 'camsi', 'CSS0034633' => 'camsi', 'CSS0046754' => 'camsi', 'DCAR_010469' => 'dca', 'DCAR_010883' => 'dca', 'DCAR_021422' => 'dca', 'DCAR_022016' => 'dca', 'DCAR_025742' => 'dca', 'Dinv15728' => 'din', 'Dinv26835' => 'din', 'Dinv26840' => 'din', 'Dinv29996' => 'din', 'Dinv30003' => 'din', 'Dinv34049' => 'din', 'Dinv34916' => 'din', 'Duzib052G0678' => 'dzi', 'Duzib132G0360' => 'dzi', 'Duzib133G1009' => 'dzi', 'Duzib138G0467' => 'dzi', 'Duzib147G0954' => 'dzi', 'Duzib187G0013' => 'dzi', 'Duzib251G0323' => 'dzi', 'Duzib264G0065' => 'dzi', 'ECA232G0055' => 'eca', 'ECA232G1716' => 'eca', 'ECA232G3547' => 'eca', 'ECA234G2835' => 'eca', 'ECA236G3358' => 'eca', 'ECA238G0841' => 'eca', 'ECA246G2926' => 'eca', 'EL10Ac2g04450' => 'bvu', 'EL10Ac6g15022' => 'bvu', 'EL10Ac6g15725' => 'bvu', 'EL10Ac6g15732' => 'bvu', 'EL10Ac9g21578' => 'bvu', 'Eucgr.H01688' => 'egr', 'Eucgr.I01136' => 'egr', 'Eucgr.J01395' => 'egr', 'Eucgr.J01396' => 'egr', 'Eucgr.J01401' => 'egr', 'Eucgr.L01682' => 'egr', 'FAN02G3952' => 'fan', 'FAN05G3821' => 'fan', 'FAN09G1674' => 'fan', 'FAN14G0540' => 'fan', 'FAN14G4934' => 'fan', 'FAN15G3698' => 'fan', 'FAN19G0687' => 'fan', 'FAN19G1009' => 'fan', 'FAN19G1541' => 'fan', 'FAN20G0277' => 'fan', 'FAN23G1123' => 'fan', 'FAN23G1530' => 'fan', 'FAN23G2645' => 'fan', 'FAN24G0112' => 'fan', 'FAN26G1884' => 'fan', 'FAN26G3484' => 'fan', 'FAN28G1186' => 'fan', 'FAN28G2630' => 'fan', 'FvH4_1g08990' => 'fve', 'FvH4_1g16200' => 'fve', 'FvH4_1g16250' => 'fve', 'FvH4_2g05830' => 'fve', 'FvH4_6g46490' => 'fve', 'Glyma.01G187200' => 'gma', 'Glyma.01G187900' => 'gma', 'Glyma.02G102700' => 'gma', 'Glyma.02G102800' => 'gma', 'Glyma.05G093000' => 'gma', 'Glyma.07G214100' => 'gma', 'Glyma.11G054200' => 'gma', 'Glyma.11G054900' => 'gma', 'Glyma.17G170900' => 'gma', 'Glyma.17G172700' => 'gma', 'Glyma.18G269700' => 'gma', 'Glyma.18G270001' => 'gma', 'Glyma.19G032800' => 'gma', 'Glyma.19G032900' => 'gma', 'Gohir.A02G156600' => 'ghi', 'Gohir.A03G105500' => 'ghi', 'Gohir.A06G118700' => 'ghi', 'Gohir.A11G159500' => 'ghi', 'Gohir.A11G193000' => 'ghi', 'Gohir.A11G197300' => 'ghi', 'Gohir.A11G201350' => 'ghi', 'Gohir.A12G023100' => 'ghi', 'Gohir.A12G072700' => 'ghi', 'Gohir.A13G041300' => 'ghi', 'Gohir.D02G130700' => 'ghi', 'Gohir.D03G024100' => 'ghi', 'Gohir.D11G165600' => 'ghi', 'Gohir.D11G200100' => 'ghi', 'Gohir.D12G023800' => 'ghi', 'Gohir.D12G070600' => 'ghi', 'Gohir.D13G040000' => 'ghi', 'Gorai.003G025600' => 'gra', 'Gorai.005G146600' => 'gra', 'Gorai.007G176600' => 'gra', 'Gorai.007G214400' => 'gra', 'Gorai.008G024200' => 'gra', 'Gorai.008G077600' => 'gra', 'Gorai.013G044900' => 'gra', 'GSVIVG01009283001' => 'vvi', 'GSVIVG01022098001' => 'vvi', 'GSVIVG01022115001' => 'vvi', 'GSVIVG01031721001' => 'vvi', 'GSVIVG01036559001' => 'vvi', 'GSVIVG01036560001' => 'vvi', 'HanXRQChr07g0188021' => 'han', 'HanXRQChr09g0263621' => 'han', 'HanXRQChr09g0263691' => 'han', 'HanXRQChr09g0264851' => 'han', 'HanXRQChr10g0301981' => 'han', 'HanXRQChr11g0331401' => 'han', 'HanXRQChr15g0490741' => 'han', 'Haze_10095' => 'cav', 'Haze_10096' => 'cav', 'Haze_11884' => 'cav', 'Haze_14393' => 'cav', 'Haze_15376' => 'cav', 'Haze_15383' => 'cav', 'Hma1.2p1_0017F.1_g011510' => 'hma', 'Hma1.2p1_0370F.1_g137680' => 'hma', 'Hma1.2p1_0909F.1_g235760' => 'hma', 'Hma1.2p1_1502F.1_g287350' => 'hma', 'Hma1.2p1_2026F.1_g311590' => 'hma', 'HPP92_000891' => 'vpl', 'HPP92_001086' => 'vpl', 'HPP92_009261' => 'vpl', 'HPP92_021874' => 'vpl', 'Hund00111' => 'sun', 'Hund06344' => 'sun', 'Hund13546' => 'sun', 'Hund16222' => 'sun', 'Hund16223' => 'sun', 'Hund16349' => 'sun', 'Hund22806' => 'sun', 'Lalb_Chr02g0158841' => 'lal', 'Lalb_Chr05g0213311' => 'lal', 'Lalb_Chr05g0219261' => 'lal', 'Lalb_Chr05g0226471' => 'lal', 'Lalb_Chr16g0378601' => 'lal', 'Lalb_Chr16g0378611' => 'lal', 'Lalb_Chr16g0384811' => 'lal', 'Lalb_Chr16g0384821' => 'lal', 'Lalb_Chr17g0336891' => 'lal', 'Lalb_Chr17g0341321' => 'lal', 'Lalb_Chr17g0341331' => 'lal', 'Lalb_Chr21g0318321' => 'lal', 'Lj1g0016750' => 'lja', 'Lj2g0005678' => 'lja', 'Lj2g0014534' => 'lja', 'Lj2g0018857' => 'lja', 'Lj2g0027591' => 'lja', 'Lj4A151T93' => 'lonja', 'Lj4C151T3' => 'lonja', 'Lj4g0004599' => 'lja', 'Lj4g0027428' => 'lja', 'Lj4g0027546' => 'lja', 'Lj5C210T10' => 'lonja', 'Lj9A355T80' => 'lonja', 'Lj9A357T88' => 'lonja', 'Lsat_1_v5_gn_0_4441' => 'lsa', 'Lsat_1_v5_gn_2_84940' => 'lsa', 'Lsat_1_v5_gn_4_164920' => 'lsa', 'Lsat_1_v5_gn_4_172900' => 'lsa', 'Lsat_1_v5_gn_5_112301' => 'lsa', 'Lsat_1_v5_gn_5_123340' => 'lsa', 'Manes.01G026400' => 'mes', 'Manes.01G102600' => 'mes', 'Manes.01G102700' => 'mes', 'Manes.02G058400' => 'mes', 'Manes.10G079200' => 'mes', 'Manes.12G103800' => 'mes', 'Manes.12G104600' => 'mes', 'Manes.13G123100' => 'mes', 'Mapoly0014s0065' => 'mpo', 'MBI01_g34136_MAGBIO' => 'mbi', 'MBI01_g34137_MAGBIO' => 'mbi', 'MBI01_g39977_MAGBIO' => 'mbi', 'MBI03_g18669_MAGBIO' => 'mbi', 'MBI03_g22583_MAGBIO' => 'mbi', 'MBI03_g30512_MAGBIO' => 'mbi', 'MBI03_g46999_MAGBIO' => 'mbi', 'MBI07_g23219_MAGBIO' => 'mbi', 'MBI07_g23441_MAGBIO' => 'mbi', 'MBI10_g27985_MAGBIO' => 'mbi', 'MBI10_g33306_MAGBIO' => 'mbi', 'MBI10_g36536_MAGBIO' => 'mbi', 'MBI15_g00523_MAGBIO' => 'mbi', 'MBI15_g00524_MAGBIO' => 'mbi', 'MBI16_g07133_MAGBIO' => 'mbi', 'MBI16_g44538_MAGBIO' => 'mbi', 'MBI19_g06121_MAGBIO' => 'mbi', 'MBI19_g25656_MAGBIO' => 'mbi', 'MBI19_g38019_MAGBIO' => 'mbi', 'MBI19_g45754_MAGBIO' => 'mbi', 'MD02G1173900' => 'mdo', 'MD02G1174800' => 'mdo', 'MD05G1082900' => 'mdo', 'MD09G1073100' => 'mdo', 'MD15G1285800' => 'mdo', 'MD17G1064700' => 'mdo', 'Medtr4g085750' => 'mtr', 'Medtr4g085800' => 'mtr', 'Medtr4g094820' => 'mtr', 'Medtr5g016880' => 'mtr', 'Medtr5g017090' => 'mtr', 'Medtr5g045680' => 'mtr', 'Medtr7g015710' => 'mtr', 'MELO3C007568.2' => 'cme', 'MELO3C019518.2' => 'cme', 'MELO3C020855.2' => 'cme', 'MELO3C022044.2' => 'cme', 'Migut.B00360' => 'egut', 'Migut.H00417' => 'egut', 'Migut.H00423' => 'egut', 'Migut.H00597' => 'egut', 'Migut.H00598' => 'egut', 'MSTRG.15383' => 'ama', 'MSTRG.20164' => 'ama', 'MSTRG.23737' => 'ama', 'MSTRG.23863' => 'ama', 'MSTRG.2872' => 'ama', 'MSTRG.3430' => 'ama', 'Nitab4.5_0001428g0080' => 'nta', 'Nitab4.5_0002029g0040' => 'nta', 'Nitab4.5_0002694g0070' => 'nta', 'Nitab4.5_0002765g0030' => 'nta', 'Nitab4.5_0003080g0020' => 'nta', 'Nitab4.5_0003519g0030' => 'nta', 'Nitab4.5_0005120g0090' => 'nta', 'Nitab4.5_0006482g0010' => 'nta', 'Nn1g04792' => 'nnu', 'Nn1g04806' => 'nnu', 'Nn4g23494' => 'nnu', 'Nn5g30260' => 'nnu', 'Nn5g30351' => 'nnu', 'Oeu006951.1' => 'oeu', 'Oeu009729.1' => 'oeu', 'Oeu010929.1' => 'oeu', 'Oeu013720.1' => 'oeu', 'Oeu014832.1' => 'oeu', 'Oeu031965.1' => 'oeu', 'Oeu036830.1' => 'oeu', 'Oeu044307.2' => 'oeu', 'Oeu062449.1' => 'oeu', 'Os03g0415200' => 'osa', 'Os04g0430200' => 'osa', 'Os04g0689300' => 'osa', 'Os08g0103500' => 'osa', 'Os09g0115600' => 'osa', 'Peaxi162Scf00016g02029' => 'pax', 'Peaxi162Scf00166g00337' => 'pax', 'Peaxi162Scf00450g10025' => 'pax', 'Peaxi162Scf00549g00017' => 'pax', 'PGR004G2329' => 'pgr', 'PGR102G3078' => 'pgr', 'PGR142G0737' => 'pgr', 'PGSC0003DMG400001373' => 'stu', 'PGSC0003DMG400004009' => 'stu', 'PGSC0003DMG400025885' => 'stu', 'PGSC0003DMG401004033' => 'stu', 'Phvul.002G017300' => 'pvu', 'Phvul.003G048300' => 'pvu', 'Phvul.003G048301' => 'pvu', 'Phvul.003G242300' => 'pvu', 'Phvul.003G243100' => 'pvu', 'Phvul.004G039000' => 'pvu', 'Phvul.004G039300' => 'pvu', 'Phvul.008G031000' => 'pvu', 'Phvul.011G058300' => 'pvu', 'Potri.004G117500' => 'ptr', 'Potri.004G140200' => 'ptr', 'Potri.005G139400' => 'ptr', 'Potri.005G140100' => 'ptr', 'Potri.007G045200' => 'ptr', 'Potri.007G045700' => 'ptr', 'Potri.009G100332' => 'ptr', 'Potri.011G144900' => 'ptr', 'Potri.017G098900' => 'ptr', 'Pp3c10_22090' => 'ppa', 'Pp3c10_22092' => 'ppa', 'Pp3c21_19100' => 'ppa', 'Pp3c3_27000' => 'ppa', 'Pp3c8_11300' => 'ppa', 'Prupe.3G250100' => 'ppe', 'Prupe.7G131000' => 'ppe', 'Prupe.7G131800' => 'ppe', 'Prupe.8G127500' => 'ppe', 'Psat0s1212g0040' => 'psa', 'Psat2g132440' => 'psa', 'Psat2g166560' => 'psa', 'Psat2g167800' => 'psa', 'Psat3g204600' => 'psa', 'Psat4g086200' => 'psa', 'Psat5g154960' => 'psa', 'Psat5g211800' => 'psa', 'Psat6g091960' => 'psa', 'Psat7g125680' => 'psa', 'Psat7g125720' => 'psa', 'PSO017G3001' => 'pso', 'PSO170G6206' => 'pso', 'PSO210G1064' => 'pso', 'PSO541G0312' => 'pso', 'PSO675G0464' => 'pso', 'QL02p066217' => 'qlo', 'QL03p073732' => 'qlo', 'QL06p040865' => 'qlo', 'QL06p041026' => 'qlo', 'QL11p035197' => 'qlo', 'QL11p035225' => 'qlo', 'QL11p035250' => 'qlo', 'RcHm_v2.0_Chr1g0319791' => 'rch', 'RcHm_v2.0_Chr1g0319961' => 'rch', 'RcHm_v2.0_Chr1g0319971' => 'rch', 'RcHm_v2.0_Chr1g0320311' => 'rch', 'RcHm_v2.0_Chr1g0320501' => 'rch', 'RcHm_v2.0_Chr1g0320591' => 'rch', 'RcHm_v2.0_Chr1g0320801' => 'rch', 'RcHm_v2.0_Chr1g0320941' => 'rch', 'RcHm_v2.0_Chr1g0321041' => 'rch', 'RcHm_v2.0_Chr2g0105901' => 'rch', 'RcHm_v2.0_Chr2g0105961' => 'rch', 'RcHm_v2.0_Chr2g0165081' => 'rch', 'RcHm_v2.0_Chr2g0165141' => 'rch', 'RcHm_v2.0_Chr6g0257791' => 'rch', 'RcHm_v2.0_Chr6g0257801' => 'rch', 'Rhsim07G0252200' => 'rsi', 'Rhsim07G0253300' => 'rsi', 'Rhsim07G0253400' => 'rsi', 'Rhsim10G0055700' => 'rsi', 'Rhsim10G0115200' => 'rsi', 'Rhsim10G0116000' => 'rsi', 'Rhsim11G0164800' => 'rsi', 'Rhsim12G0167400' => 'rsi', 'Sabra04G0070700' => 'sbr', 'Sabra04G0092200' => 'sbr', 'Sabra05G0111400' => 'sbr', 'Sabra07G0040100' => 'sbr', 'Sabra07G0040700' => 'sbr', 'Sabra11G0129900' => 'sbr', 'Sabra17G0085300' => 'sbr', 'SalBow1G1405' => 'sbo', 'SalBow1G6118' => 'sbo', 'SalBow5G0992' => 'sbo', 'SalBow6G4628' => 'sbo', 'Sc03g0001660' => 'sci', 'Sc08g0001730' => 'sci', 'Sc16g0004610' => 'sci', 'Sed0001508' => 'sed', 'Sed0002740' => 'sed', 'Sed0004905' => 'sed', 'Sed0007419' => 'sed', 'Sed0011020' => 'sed', 'SEGI_12374' => 'sgi', 'SEGI_19498' => 'sgi', 'SEGI_20694' => 'sgi', 'SEGI_28462' => 'sgi', 'SEGI_34682' => 'sgi', 'SEGI_37333' => 'sgi', 'SEGI_40990' => 'sgi', 'SEGI_41447' => 'sgi', 'SGA_v2.0_scaffold204G41567' => 'sas', 'SGA_v2.0_scaffold269G46288' => 'sas', 'SGA_v2.0_scaffold469G52059' => 'sas', 'SGA_v2.0_scaffold52G19109' => 'sas', 'SGA_v2.0_scaffold62G21522' => 'sas', 'SGA_v2.0_scaffold90G27624' => 'sas', 'SHI10790' => 'shi', 'SHI22900' => 'shi', 'SHI30269' => 'shi', 'SMO172G0070' => 'smo', 'SMO367G1189' => 'smo', 'Solyc01g107990.3' => 'sly', 'Solyc02g089150.4' => 'sly', 'Solyc02g093210.3' => 'sly', 'Solyc02g093310.3' => 'sly', 'Sopen01g050190' => 'spe', 'Sopen02g033940' => 'spe', 'Sopen02g037790' => 'spe', 'Sopen02g037870' => 'spe', 'Sp1g12230' => 'spa', 'Sp1g36630' => 'spa', 'Sp2g29560' => 'spa', 'Sp3g17390' => 'spa', 'Sp7g34820' => 'spa', 'TAR376G0180' => 'tar', 'TAR381G0452' => 'tar', 'TAR625G0551' => 'tar', 'TAR628G0172' => 'tar', 'TAR629G0781' => 'tar', 'THA.LOC104798795' => 'tha', 'THA.LOC104804213' => 'tha', 'THA.LOC104805947' => 'tha', 'THA.LOC104817107' => 'tha', 'THA.LOC104821252' => 'tha', 'THA.LOC104825371' => 'tha', 'THA.LOC104827235' => 'tha', 'Thecc.01G058300' => 'tca', 'Thecc.01G059300' => 'tca', 'Thecc.02G102600' => 'tca', 'Thecc.02G327100' => 'tca', 'Thecc.04G104400' => 'tca', 'Thhalv10004292m.g' => 'esa', 'Thhalv10009757m.g' => 'esa', 'Thhalv10011609m.g' => 'esa', 'Thhalv10020826m.g' => 'esa', 'Thhalv10025378m.g' => 'esa', 'TPR.G12565' => 'tpr', 'TPR.G12716' => 'tpr', 'TPR.G19066' => 'tpr', 'TPR.G23428' => 'tpr', 'TPR.G23732' => 'tpr', 'TPR.G26901' => 'tpr', 'TPR.G30690' => 'tpr', 'TWI31G0396' => 'twi', 'TWI31G0778' => 'twi', 'TWI53G1655' => 'twi', 'TWI60G0575' => 'twi', 'TWI60G0705' => 'twi', 'TWI60G0883' => 'twi', 'TWI73G0106' => 'twi', 'TWI73G1275' => 'twi', 'TWI75G0075' => 'twi', 'unitig_0.g88' => 'ugi', 'unitig_27.g25328' => 'ugi', 'unitig_899.g14949' => 'ugi', 'vmacro02038' => 'vma', 'vmacro05306' => 'vma', 'vmacro05310' => 'vma', 'vmacro05619' => 'vma', 'vmacro05620' => 'vma', 'vmacro06044' => 'vma', 'VMungo0251G0068' => 'vmu', 'VMungo0251G2615' => 'vmu', 'VMungo0251G2902' => 'vmu', 'VMungo0251G3209' => 'vmu', 'VMungo0464G0149' => 'vmu', 'VMungo0464G0579' => 'vmu', 'VMungo1127G0055' => 'vmu', 'VMungo1215G3038' => 'vmu', 'VMungo1383G3202' => 'vmu', 'Zm00001eb039800' => 'zma', 'Zm00001eb076220' => 'zma', 'Zm00001eb082840' => 'zma', 'Zm00001eb198840' => 'zma', 'Zm00001eb393060' => 'zma', 'Zm00001eb424840' => 'zma' ) $gf_id = 'HOM05D000934' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000934' ) $data_identifier = 'HOM05D000934' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 11, 'bca' => (int) 10, 'bol' => (int) 8, 'bra' => (int) 7, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 8, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'csa' => (int) 4, 'camsi' => (int) 13, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 18, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 17, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 12, 'lja' => (int) 8, 'lonja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 20, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 3, 'stu' => (int) 4, 'pvu' => (int) 9, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 4, 'psa' => (int) 11, 'pso' => (int) 5, 'qlo' => (int) 7, 'rch' => (int) 15, 'rsi' => (int) 8, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 2, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 3, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424840' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1